Covid-19 Research

Research Article

OCLC Number/Unique Identifier: 9528699925

Interactions b/w Collagen and Polylactic-Acid Molecular Models Due to DFT Calculations

Biology Group    Start Submission

Kazunaka Endo*, Megumi Fuse and Nobuhiko Kato

Volume3-Issue5
Dates: Received: 2022-05-03 | Accepted: 2022-05-07 | Published: 2022-05-13
Pages: 537-546

Abstract

Collagen and Polylactic Acid (PLA) as biomaterials in the tissue engineering have been investigated for the structure and function in considerably large progress. From a viewpoint of its electronic structures in the subnano-meter range, we investigate the bonding nature for five models of the type I collagen, PLA models and the bimolecular interaction between the models by using Density Functional Theory (DFT) calculations with Frontier MO theory. In order to confirm the accuracy of the models, we compare the simulated IR and C1s X-ray photoelectron spectra with experimental results. Especially, the interaction between PLA and (AspHypGly)-collagen models was obtained as the chemical bond energy (1540 kJ/mol), and the results of PLA-other four collagen bimolecular models were given as intermolecular bond energies of 30 ∼ 81 kJ/mol. The intermolecular interaction is due to inter-H-bond of –OH---O=, -NH---O=, and –CH---O= functional groups, respectively, using MO calculations.

FullText HTML FullText PDF DOI: 10.37871/jbres1476


Certificate of Publication




Copyright

© 2022 Endo K, et al. Distributed under Creative Commons CC-BY 4.0

How to cite this article

Endo K, Fuse M, Kato N. Interactions b/w Collagen and Polylactic-Acid Molecular Models Due to DFT Calculations. J Biomed Res Environ Sci. 2022 May 13; 3(5): 537-546. doi: 10.37871/jbres1476, Article ID: JBRES1476, Available at: https://www.jelsciences.com/articles/jbres1476.pdf


Subject area(s)

References


  1. Quirk R, Davies MC, Tendler SJB, Shakesheff KM. Surface engineering of poly (lactic acid) by entrapment of modifying species. Macromolecules. 2000;33(2):258-260. https://tinyurl.com/4rpdrf95
  2. Chen G, Ushida T, Tateishi T. Scaffold design for tissue engineering. Macromol Biosci. 2002;2:67-77. https://tinyurl.com/2fm4n2tv
  3. Castner DG, Ratner BD. Biomedical surface science: Foundations to frontiers. Surf Sci. 2000;500:28-60. https://tinyurl.com/2p8vzhz7
  4. Li WJ, Laurencin CT, Caterson EJ, Tuan RS, Ko FK. Electrospun nanofibrous structure: A novel scaffold for tissue engineering. J Biomed Mater Res. 2002 Jun 15;60(4):613-621. doi: 10.1002/jbm.10167. PMID: 11948520.
  5. Vasita R, Shanmugam I K, Katt DS. Improved biomaterials for tissue engineering applications: Surface modification of polymers. Curr Top Med Chem. 2008;8(4):341-353. doi: 10.2174/156802608783790893. PMID: 18393896.
  6. Rafael, Loong TL, Susan EM, Hideto T. Poly (lactic acid): Synthesis, structures, properties, processing, and applications. Polymer Science & Technology General. https://tinyurl.com/dc73aws6
  7. Nazre, Lin S. Theoretical Strength Comparison of Bioabsorbable (PLLA) plates and conventional stainless steel and titanium plates used in internal fracture fixation. Clinical and Laboratory Performance of Bone Plates. 1994:53-64. https://tinyurl.com/2n648fku
  8. Szpak Paul. Fish bone chemistry and ultrastructure: Implications for taphonomy and stable isotope analysis. J Archaeological Science. 2011;38(12):3358–3372. https://tinyurl.com/3znv5u9a
  9. Kramer RZ, Venugopal MG, Bella J, Mayville P, Brodsky B, Berman HM. Staggered molecular packing in crystals of a collagen-like peptide with a single charged pair. J Mol Biol. 2000 Sep 1;301(5):1191-1205. doi: 10.1006/jmbi.2000.4017. PMID: 10966815.
  10. Berisio R, Vitagliano L, Mazzarella L, Zagari A. Crystal structure of a collagen-like polypeptide with repeating sequence Pro-Hyp-Gly at 1.4 Å resolution: Implication for collagen hydration. Biopolymers. 2001;56:8–13. https://tinyurl.com/2udt4kn8
  11. Brodsky B, Ramshaw JA. The collagen triple-helix structure. Matrix Biol. 1997 Mar;15(8-9):545-54. doi: 10.1016/s0945-053x(97)90030-5. PMID: 9138287.
  12. Tambe N, Di J, Zhang Z, Bernacki S, El-Shafei A, King MW. Novel genipin-collagen immobilization of Polylactic Acid (PLA) fibers for use as tissue engineering scaffolds. J Biomed Mater Res B Appl Biomater. 2015 Aug;103(6):1188-1197. doi: 10.1002/jbm.b.33285. Epub 2014 Oct 11. PMID: 25308088.
  13. García G, Cabarcos LE, Castro RM. Study of poly (lactic-co-glycolic acid) interactions with collagen. European Polymer Journal. 2005;41:2416-2421. https://tinyurl.com/5n76sbmz
  14. Adamczak M, Scisłowska-Czarnecka A, Genet MJ, Dupont-Gillain CC, Pamuła E. Surface characterization, collagen adsorption and cell behaviour on poly(L-lactide-co-glycolide). Acta Bioeng Biomech. 2011;13(3):63-75. PMID: 22098254.
  15. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA. Software of Quantum Chemical Calculations. 2009.
  16. Fukui K, Yonezawa T, Shingu H. A Molecular Orbital Theory of Reactivity in Aromatic Hydrocarbons. J Chem Phys. 1952;20:722. https://tinyurl.com/3r3eby5r
  17. Stewart JJP. Optimization of parameters for semiempirical methods II. Applications. J Comput Chem. 1989;10:209-220. https://tinyurl.com/356rms92
  18. Ohkura K, Hori H. Analysis of structure-permeability correlation of nitrophenol analogues in newborn rat abdominal skin using semiempirical molecular orbital calculation. Bioorg Med Chem. 1999 Feb;7(2):309-314. doi: 10.1016/s0968-0896(98)00200-4. PMID: 10218822.
  19. Vidal Bde C, Mello ML. Collagen type I amide I band infrared spectroscopy. Micron. 2011 Apr;42(3):283-289. doi: 10.1016/j.micron.2010.09.010. Epub 2010 Nov 18. PMID: 21134761.
  20. Darwent B. Bond Dissociation Energies in Simple Molecules. National Bureau of Standards LCCN 70602101. https://tinyurl.com/23hvmphd
  21. Ida T, Mizuno M, Endo K. Electronic state of small and large cavities for methane hydrate. J Comput Chem. 2002 Aug;23(11):1071-1075. doi: 10.1002/jcc.10095. PMID: 12116393.
  22. Ida T, Endo K, Matsumoto D, Kato N, Mizuno M, Suzuki Y, Tadokoro M. Dynamic and Static Behaviors of CH4 and CO2 in small and large cavities of hydrate. J Mol Struct. 2013;1032:275-280. https://tinyurl.com/2ckxaepf
  23. Endo K, Hayashi K, Ida T, Takemura T. IR and Py-GC/MS spectral simulation of polymer film by quantum chemical and quantum molecular dynamics calculations using the polymer model. Russ J Phys Chem. 2014;88(13):2370-2379.
  24. Lee LH. Fundamentals of adhesion. Chemical bonding and Intermolecular Forces. 1994:454.


Comments


Swift, Reliable, and studious. We aim to cherish the world by publishing precise knowledge.

  • asd
  • Brown University Library
  • University of Glasgow Library
  • University of Pennsylvania, Penn Library
  • University of Amsterdam Library
  • The University of British Columbia Library
  • UC Berkeley’s Library
  • MIT Libraries
  • Kings College London University
  • University of Texas Libraries
  • UNSW Sidney Library
  • The University of Hong Kong Libraries
  • UC Santa Barbara Library
  • University of Toronto Libraries
  • University of Oxford Library
  • Australian National University
  • ScienceOpen
  • UIC Library
  • KAUST University Library
  • Cardiff University Library
  • Ball State University Library
  • Duke University Library
  • Rutgers University Library
  • Air University Library
  • UNT University of North Texas
  • Washington Research Library Consortium
  • Penn State University Library
  • Georgetown Library
  • Princeton University Library
  • Science Gate
  • Internet Archive
  • WashingTon State University Library
  • Dimensions
  • Zenodo
  • OpenAire
  • Index Copernicus International
  • icmje
  •  International Scientific Indexing (ISI)
  • Sherpa Romeo
  • ResearchGate
  • Universidad De Lima
  • WorldCat
  • JCU Discovery
  • McGill
  • National University of Singepore Libraries
  • SearchIT
  • Scilit
  • SemantiScholar
  • Base Search
  • VU
  • KB
  • Publons
  • oaji
  • Harvard University
  • sjsu-library
  • UWLSearch
  • Florida Institute of Technology
  • CrossRef
  • LUBsearch
  • Universitat de Paris
  • Technical University of Denmark
  • ResearchBIB
  • Google Scholar
  • Microsoft Academic Search