Covid-19 Research

Short Communication

OCLC Number/Unique Identifier: 9501820229

Molecules Absorption Prediction Using Support Vector, Adaboost, Random Forest and Decision Tree Classification

Medicine Group    Start Submission

Suprapto Suprapto* and Yatim Lailun Nimah

Volume3-Issue3
Dates: Received: 2022-03-18 | Accepted: 2022-03-22 | Published: 2022-03-22
Pages: 277-282

Abstract

Classification is supervised machine learning applicable to predict chemicals based on their properties. The chemical properties are derived from its structural and functional groups. Many molecular descriptors have been developed, one of which, was pharmacophore. Pharmacophore is a quantitative measure of molecules in their application as a pharmaceutical ingredient. The training datasets were 59 molecules categorized on their adsorption properties. The classification was carried out to divide the training set into their adsorption class using their pharmacophores. The prediction of enolic curcumin and its degradation product was used to verify the trueness of classification methods based on their pharmacophores. Curcumin and its degradation product were used because there were many studies carried out about curcumin and its pharmaceutical effect.

FullText HTML FullText PDF DOI: 10.37871/jbres1433


Certificate of Publication




Copyright

© 2022 Suprapto S, et al. Distributed under Creative Commons CC-BY 4.0

How to cite this article

Suprapto S, Ni’mah YL. Molecules Absorption Prediction Using Support Vector, Adaboost, Random Forest and Decision Tree Classification. J Biomed Res Environ Sci. 2022 Mar 22; 3(3): 277-282. doi: 10.37871/jbres1433, Article ID: JBRES1433, Available at: https://www.jelsciences.com/articles/jbres1433.pdf


Subject area(s)

References


  1. Yang SY. Pharmacophore modeling and applications in drug discovery: challenges and recent advances. Drug Discovery Today. 2010;15(11):444-450. doi: 10.1016/j.drudis.2010.03.013.
  2. Lipinski, Lombardo, Dominy, Feeney. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced Drug Delivery Reviews. 2021;64:4-17. doi: 10.1016/j.addr.2012.09.019.
  3. Batten. Classification of chemical compound pharmacophore structures. 83-93. https://tinyurl.com/59uaptcr
  4. Shen L, Ji HF. The pharmacology of curcumin: is it the degradation products? Trends Mol Med. 2012 Mar;18(3):138-144. doi: 10.1016/j.molmed.2012.01.004. Epub 2012 Mar 1. PMID: 22386732.
  5. L. Buitinck. API design for machine learning software: experiences from the scikit-learn project. https://tinyurl.com/app/myurls
  6. Landrum. RDKit: Open-source cheminformatics software. 2016. http://www.rdkit.org/
  7. Mather, Tso B. Classification methods for remotely sensed data, 2nd ed. Boca Raton: CRC Press. 2009. doi: 10.1201/9781420090741.
  8. Liu X, Dai Y, Zhang Y, Yuan Q, Zhao L. A pre-processing method of ADA Boost for mislabelled data classification,” in 2017 29th Chinese Control and Decision Conference (CCDC). 2017:2738–2742. doi: 10.1109/CCDC.2017.7978978.


Comments


Swift, Reliable, and studious. We aim to cherish the world by publishing precise knowledge.

  • asd
  • Brown University Library
  • University of Glasgow Library
  • University of Pennsylvania, Penn Library
  • University of Amsterdam Library
  • The University of British Columbia Library
  • UC Berkeley’s Library
  • MIT Libraries
  • Kings College London University
  • University of Texas Libraries
  • UNSW Sidney Library
  • The University of Hong Kong Libraries
  • UC Santa Barbara Library
  • University of Toronto Libraries
  • University of Oxford Library
  • Australian National University
  • ScienceOpen
  • UIC Library
  • KAUST University Library
  • Cardiff University Library
  • Ball State University Library
  • Duke University Library
  • Rutgers University Library
  • Air University Library
  • UNT University of North Texas
  • Washington Research Library Consortium
  • Penn State University Library
  • Georgetown Library
  • Princeton University Library
  • Science Gate
  • Internet Archive
  • WashingTon State University Library
  • Dimensions
  • Zenodo
  • OpenAire
  • Index Copernicus International
  • icmje
  •  International Scientific Indexing (ISI)
  • Sherpa Romeo
  • ResearchGate
  • Universidad De Lima
  • WorldCat
  • JCU Discovery
  • McGill
  • National University of Singepore Libraries
  • SearchIT
  • Scilit
  • SemantiScholar
  • Base Search
  • VU
  • KB
  • Publons
  • oaji
  • Harvard University
  • sjsu-library
  • UWLSearch
  • Florida Institute of Technology
  • CrossRef
  • LUBsearch
  • Universitat de Paris
  • Technical University of Denmark
  • ResearchBIB
  • Google Scholar
  • Microsoft Academic Search