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Challenges to Explore Genus Streptomyces in Ethiopia-A Mini Review

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Open Access
Article Type Mini Review
Subject Biology Group
OCLC 9382549307
Endeshaw Abatneh*
Issue: Volume2-Issue11
Pages: 1085-1091
Received: 2021-08-26
Accepted: 2021-11-08
Published: 2021-11-12

Abstract

Genus Streptomyces is gram-positive bacteria that grow in various environments. It has plentiful biotechnological attributes on the area of agricultural, bioremediation, biofuel, clinical, food, industrial, medical, pharmaceutical, and veterinary. The aim of the review is to frontward challenges to explore potent Streptomyces species in the case of Ethiopia. There is lack of the extent and quality of the genetic research regarding to genome sequence, bioactive compound discovery, and genetic manipulation. Their functional and structural diversity is not full studied. To find a new Streptomyces species: Culture media formulation and optimization as wells culture-independent method like Next Generation Sequencing approach should incorporate at national level.

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© 2021 Abatneh E. Distributed under Creative Commons CC-BY 4.0 Creative CommonsAttribution

How to cite this article

Abatneh E. Challenges to Explore Genus Streptomyces in Ethiopia-A Mini Review. J Biomed Res Environ Sci. 2021 Nov 12; 2(11): 1085-1091. doi: 10.37871/jbres1352, Article ID: JBRES1352, Available at: https://www.jelsciences.com/articles/jbres1352.pdf

Subject area(s)

MicrobiologyBiology

University/Institute

Addis Ababa Unversity

References

  1. Ahmad SJ, Mohamad Zin N, Mazlan NW, Baharum SN, Baba MS, Lau YL. Metabolite profiling of endophytic Streptomyces spp. and its antiplasmodial potential. PeerJ. 2021 Mar 15;9:e10816. doi: 10.7717/peerj.10816. PMID: 33777509; PMCID: PMC7971094.
  2. Al-hulu SM. Antibacterial activity for Biosurfactant produced by streptomyces spp. isolated from soil samples. Asian J Pharm Clin Res. 2020;13(7):109-110. doi: 10.22159/ajpcr.2020.v13i7.37472
  3. Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Meier-Kolthoff JP, Klenk HP, Clément C, Ouhdouch Y, van Wezel GP. Taxonomy, Physiology, and Natural Products of Actinobacteria. Microbiol Mol Biol Rev. 2015 Nov 25;80(1):1-43. doi: 10.1128/MMBR.00019-15. Erratum in: Microbiol Mol Biol Rev. 2016 Nov 9;80(4):iii. PMID: 26609051; PMCID: PMC4711186.
  4. Law JW, Ser HL, Khan TM, Chuah LH, Pusparajah P, Chan KG, Goh BH, Lee LH. The Potential of Streptomyces as Biocontrol Agents against the Rice Blast Fungus, Magnaporthe oryzae (Pyricularia oryzae). Front Microbiol. 2017 Jan 17;8:3. doi: 10.3389/fmicb.2017.00003. PMID: 28144236; PMCID: PMC5239798.
  5. Labeda DP, Goodfellow M, Brown R, Ward AC, Lanoot B, Vanncanneyt M, Swings J, Kim SB, Liu Z, Chun J, Tamura T, Oguchi A, Kikuchi T, Kikuchi H, Nishii T, Tsuji K, Yamaguchi Y, Tase A, Takahashi M, Sakane T, Suzuki KI, Hatano K. Phylogenetic study of the species within the family Streptomycetaceae. Antonie Van Leeuwenhoek. 2012 Jan;101(1):73-104. doi: 10.1007/s10482-011-9656-0. Epub 2011 Nov 2. PMID: 22045019.
  6. Chater KF. Recent advances in understanding Streptomyces. F1000Res. 2016 Nov 30;5:2795. doi: 10.12688/f1000research.9534.1. PMID: 27990276; PMCID: PMC5133688.
  7. Raghava Rao KV, Siva kumar K, Bhaskar Rao D, Raghava Rao T. Isolation and characterization of antagonistic actinobacteria from mangrove soil. J Biochem Tech. 2012;3:361-365.
  8. https://tinyurl.com/yf3tjmpu
  9. Hamid ME, Reitz T, Joseph MRP, Hommel K, Mahgoub A, Elhassan MM, Buscot F, Tarkka M. Diversity and geographic distribution of soil streptomycetes with antagonistic potential against actinomycetoma-causing Streptomyces sudanensis in Sudan and South Sudan. BMC Microbiol. 2020 Feb 12;20(1):33. doi: 10.1186/s12866-020-1717-y. PMID: 32050891; PMCID: PMC7017484.
  10. Bizuye A, Moges F, Andualem B. Isolation and screening of antibiotic producing actinomycetes from soils in Gondar town, North West Ethiopia. Asian Pac. J. Trop. Dis., 2013;3(5):375-381. doi: 10.1016/S2222-1808(13)60087-0
  11. Kibret M, Guerrero-Garzón JF, Urban E, Zehl M, Wronski VK, Rückert C, Busche T, Kalinowski J, Rollinger JM, Abate D, Zotchev SB. Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry. Front Microbiol. 2018 Jun 12;9:1270. doi: 10.3389/fmicb.2018.01270. PMID: 29946312; PMCID: PMC6007079.
  12. Bizuye A, Moges F, Andualem B. Isolation and screening of antibiotic producing actinomycetes from soils in Gondar town, North West Ethiopia. Asian Pac. J. Trop. Dis., 2013;3(5):375-381. doi: 10.1016/S2222-1808(13)60087-0
  13. GiZaw B. Potential microbial ecology in Ethiopia and exsitu conservation effort. Annals of Microbiology and Infectious diseases. 2018;1(4):8-39.
  14. https://tinyurl.com/hbrnpa8
  15. Procópio RE, Silva IR, Martins MK, Azevedo JL, Araújo JM. Antibiotics produced by Streptomyces. Braz J Infect Dis. 2012 Sep-Oct;16(5):466-71. doi: 10.1016/j.bjid.2012.08.014. Epub 2012 Sep 11. PMID: 22975171.
  16. Quinn GA, Banat AM, Abdelhameed AM, Banat IM. Streptomyces from traditional medicine: sources of new innovations in antibiotic discovery. J Med Microbiol. 2020 Aug;69(8):1040-1048. doi: 10.1099/jmm.0.001232. Epub 2020 Jul 15. PMID: 32692643; PMCID: PMC7642979.
  17. Ling-Feng Zhou, Jun Wu, Shuai Li, Qi Li (2021). Antibacterial Potential of Termite-Associated Streptomyces spp. ACS Omega, 6: 4329−4334.
  18. Khan ST, Komaki H, Motohashi K, Kozone I, Mukai A, Takagi M, Shin-ya K. Streptomyces associated with a marine sponge Haliclona sp.; biosynthetic genes for secondary metabolites and products. Environ Microbiol. 2011 Feb;13(2):391-403. doi: 10.1111/j.1462-2920.2010.02337.x. Epub 2010 Sep 16. PMID: 20849448.
  19. Wainwright M. Streptomycin: discovery and resultant controversy. Hist Philos Life Sci. 1991;13(1):97-124. PMID: 1882032.
  20. Quinn GA, Banat AM, Abdelhameed AM, Banat IM. Streptomyces from traditional medicine: sources of new innovations in antibiotic discovery. J Med Microbiol. 2020 Aug;69(8):1040-1048. doi: 10.1099/jmm.0.001232. Epub 2020 Jul 15. PMID: 32692643; PMCID: PMC7642979.
  21. Rothrock CS, Gottleib D. Role of antibiosis in antagonism of Streptomyces hygroscopicus var. geldanus to Rhizoctonia solani in soil. Can J. 1984;1-6. doi: 10.1139/m84-230
  22. Wellington EMH, Marsh P, Toth IK, AS, Schilhabel M. The selective effects of antibiotics in soils. In: Guerrero R, Pedros-Alio C. editors. Trends in Microbialecology. Spanish Society for Microbiology. Spain: Barcelona; 1993. p. 331-336.
  23. Martens E, Demain AL. Platensimycin and platencin: promising antibiotics for future application in human medicine. J Antibiot (Tokyo). 2011 Nov;64(11):705-10. doi: 10.1038/ja.2011.80. Epub 2011 Sep 14. PMID: 21915133.
  24. Nakaew N, Lumyong S, Sloan WT, Sungthong R. Bioactivities and genome insights of a thermotolerant antibiotics-producing Streptomyces sp. TM32 reveal its potentials for novel drug discovery. Microbiologyopen. 2019 Nov;8(11):e842. doi: 10.1002/mbo3.842. Epub 2019 Apr 2. PMID: 30941917; PMCID: PMC6854843.
  25. Arzuaga NO, Vila Granda A, Gómez JC, San Miguel ME, Bourzac JF, Hernández YL, Elías López AL, Pólux CR, Mesa LG, Hernández-Pando R, Domínguez AA. The use of Streptomyces for immunization against mycobacterial infections. Hum Vaccin. 2011 Sep;7(9):934-40. doi: 10.4161/hv.7.9.16000. Epub 2011 Sep 1. PMID: 21892004.
  26. Dias DA, Urban S, Roessner U. A historical overview of natural products in drug discovery. Metabolites. 2012 Apr 16;2(2):303-36. doi: 10.3390/metabo2020303. PMID: 24957513; PMCID: PMC3901206.
  27. Van der Ent S, Van Wees SC, Pieterse CM. Jasmonate signaling in plant interactions with resistance-inducing beneficial microbes. Phytochemistry. 2009 Sep;70(13-14):1581-8. doi: 10.1016/j.phytochem.2009.06.009. Epub 2009 Aug 25. PMID: 19712950.
  28. Cinkocki R, Lipková N, Javoreková S, Petrová J, Maková J, Medo J, Ducsay L. The Impact of growth-promoting Streptomycetes isolated from Rhizosphere and bulk soil on Oilseed Rape (Brassica napus L.) growth parameters. Sustainability. 2021;13(5704):1-14. doi: 10.3390/su13105704
  29. Tamreihao K, Ningthoujam DS, Nimaichand S, Singh ES, Reena P, Singh SH, Nongthomba U. Biocontrol and plant growth promoting activities of a Streptomyces corchorusii strain UCR3-16 and preparation of powder formulation for application as biofertilizer agents for rice plant. Microbiol Res. 2016 Nov;192:260-270. doi: 10.1016/j.micres.2016.08.005. Epub 2016 Aug 4. PMID: 27664745.
  30. Ferrera CM, Olivetea JE. A Review on Streptomyces spp. as Plant-Growth Promoting Bacteria (PGPB). Asian J Pharmacogn. 2018;2(3):32-40.
  31. Ebrahimi-Zarandi M, Bonjar GHS, Riseh RS. Exploring two Streptomyces Species to control Rhizoctonia solani in Tomato. Agronomy. 2021;11(1384):1-18. doi: 10.3390/agronomy11071384
  32. Olanrewaju OS, Babalola OO. Streptomyces: implications and interactions in plant growth promotion. Appl Microbiol Biotechnol. 2019 Feb;103(3):1179-1188. doi: 10.1007/s00253-018-09577-y. Epub 2018 Dec 29. PMID: 30594952; PMCID: PMC6394478.
  33. Mukhtar S, Zaheer A, Aiysha D. Actinomycetes: A Source of industrially important enzymes. J Proteomics Bioinform, an open access journal.2017;10(12): 316-319. doi: 10.4172/0974-276X.1000456
  34. Sevillano L, Vijgenboom E, van Wezel GP, Díaz M, Santamaría RI. New approaches to achieve high level enzyme production in Streptomyces lividans. Microb Cell Fact. 2016 Feb 4;15:28. doi: 10.1186/s12934-016-0425-7. PMID: 26846788; PMCID: PMC4743123.
  35. Nandhini U, Sudha S, Anusha S, Jeslin V, Manisha S. Isolation, identification and extraction of antimicrobial compounds produced by Streptomyces sps from terrestrial soil. Biocatal Agric Biotechnol. 2018;15:317-321. doi: 10.1016/j.bcab.2018.06.024
  36. Hamedi J, Poorinmohammad N, Wink J. The role of actinobacteria in biotechnology.In: Biology and biotechnology of actinobacteria. Cham: Springer international Publishing: 2017. p. 269-328. doi: 10.1007/978-3-319-60339-1_10
  37. Goodfellow M, Fiedler HP. A guide to successful bioprospecting: informed by actinobacterial systematics. Antonie Van Leeuwenhoek. 2010 Aug;98(2):119-42. doi: 10.1007/s10482-010-9460-2. Epub 2010 Jun 26. PMID: 20582471.
  38. Song L, Jiang N, Wei S, Lan Z, Pan L. Isolation, Screening, and Identification of Actinomycetes with Antifungal and Enzyme Activity Assays against Colletotrichum dematium of Sarcandra glabra. Mycobiology. 2020 Feb 11;48(1):37-43. doi: 10.1080/12298093.2020.1716604. PMID: 32158604; PMCID: PMC7048178.
  39. Newman DJ, Cragg GM. Natural Products as Sources of New Drugs from 1981 to 2014. J Nat Prod. 2016 Mar 25;79(3):629-61. doi: 10.1021/acs.jnatprod.5b01055. Epub 2016 Feb 7. PMID: 26852623.
  40. van der Meij A, Worsley SF, Hutchings MI, van Wezel GP. Chemical ecology of antibiotic production by actinomycetes. FEMS Microbiol Rev. 2017 May 1;41(3):392-416. doi: 10.1093/femsre/fux005. PMID: 28521336.
  41. Nett M, Ikeda H, Moore BS. Genomic basis for natural product biosynthetic diversity in the actinomycetes. Nat Prod Rep. 2009 Nov;26(11):1362-84. doi: 10.1039/b817069j. Epub 2009 Sep 1. PMID: 19844637; PMCID: PMC3063060.
  42. Kealey C, Creaven CA, Murphy CD, Brady CB. New approaches to antibiotic discovery. Biotechnol Lett. 2017 Jun;39(6):805-817. doi: 10.1007/s10529-017-2311-8. Epub 2017 Mar 8. PMID: 28275884.
  43. Zotchev SB. Marine actinomycetes as an emerging resource for the drug development pipelines. J Biotechnol. 2012 Apr 30;158(4):168-75. doi: 10.1016/j.jbiotec.2011.06.002. Epub 2011 Jun 12. PMID: 21683100.
  44. Khanna M, Solanki R, Lal R. Selective isolation of rare actinomycetes producing novel antimicrobial compounds. Int. J.Adv. Biotech. Res. 2011;2(3):357-375.
  45. https://tinyurl.com/3r95zdxw
  46. Davies J, Davies D. Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev. 2010 Sep;74(3):417-33. doi: 10.1128/MMBR.00016-10. PMID: 20805405; PMCID: PMC2937522.
  47. Shankar PR, Balasubramanium R. Antimicrobial resistance: Global report on surveillance 2014. Australasian Medical Journal. 2014;7(5):237.
  48. Spellberg B, Guidos R, Gilbert D, Bradley J, Boucher HW, Scheld WM, Bartlett JG, Edwards J, Jr. Infectious Diseases Society of America. The epidemic of antibiotic-resistant infections: a call to action for the medical community from the Infectious Diseases Society of America. Clin Infect Dis. 2008 Jan 15;46(2):155-64. doi: 10.1086/524891. PMID: 18171244.
  49. Dienstmann R, Picoli SU, Meyer G, Schenkel T, Steyer J. Avaliac¸ão fenotípica da enzima Klebsiella Pneumonia Carbapenemase (KPC) em Enterobacteriaceae de ambiente hospitalar. J Bras Patol Med Lab. 2010;46:23-7. doi:10.1590/S1676-24442010000100005.
  50. Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo WGP, Pinto-Tomás AA, Schmitz A, Wendt-Pienkowski E, Wildman S, Zhao M, Zhang F, Bugni TS, Andes DR, Pupo MT, Currie CR. The antimicrobial potential of Streptomyces from insect microbiomes. Nat Commun. 2019 Jan 31;10(1):516. doi: 10.1038/s41467-019-08438-0. PMID: 30705269; PMCID: PMC6355912.
  51. Odumosu BT, Buraimoh OM, Okeke CJ, Ogah JO, Michel Jr FC. Antimicrobial activities of the Streptomycesstrain AOB KF977550 isolated from a tropical estuary. Journal of Taibah University for Science. 2017;11(6):836-841. doi:10.1016/j.jtusci.2017.01.006
  52. Tenebro CP, Trono DJVL, Vicera CVB, Sabido EM, Ysulat JA Jr, Macaspac AJM, Tampus KA, Fabrigar TAP, Saludes JP, Dalisay DS. Publisher Correction: Multiple strain analysis of Streptomyces species from Philippine marine sediments reveals intraspecies heterogeneity in antibiotic activities. Sci Rep. 2021 Sep 20;11(1):19046. doi: 10.1038/s41598-021-98601-9. Erratum for: Sci Rep. 2021 Sep 2;11(1):17544. PMID: 34545142; PMCID: PMC8452725
  53. Reta A, Bitew Kifilie A, Mengist A. Bacterial Infections and Their Antibiotic Resistance Pattern in Ethiopia: A Systematic Review. Adv Prev Med. 2019 Aug 5;2019:4380309. doi: 10.1155/2019/4380309. PMID: 31467724; PMCID: PMC6699360.
  54. Awoke T, Teka B, Seman A, Sebre S, Yeshitela B, Aseffa A, Mihret A, Abebe T. High Prevalence of Multidrug-Resistant Klebsiella pneumoniae in a Tertiary Care Hospital in Ethiopia. Antibiotics (Basel). 2021 Aug 20;10(8):1007. doi: 10.3390/antibiotics10081007. PMID: 34439057; PMCID: PMC8388856.
  55. Awoke T, Teka B, Seman A, Sebre S, Yeshitela B, Aseffa A, Mihret A, Abebe T. High Prevalence of Multidrug-Resistant Klebsiella pneumoniae in a Tertiary Care Hospital in Ethiopia. Antibiotics (Basel). 2021 Aug 20;10(8):1007. doi: 10.3390/antibiotics10081007. PMID: 34439057; PMCID: PMC8388856.
  56. Ten Hove RJ, Tesfaye M, Ten Hove2 WF, Nigussie M. Profiling of antibiotic resistance of bacterial species recovered from routine clinical isolates in Ethiopia. Ann Clin Microbiol Antimicrob. 2017 Jun 26;16(1):46. doi: 10.1186/s12941-017-0221-1. PMID: 28651533; PMCID: PMC5485741.
  57. Learn-Han L, Yoke-Kqueen C, Shiran MS, Vui-Ling CM, Nurul-Syakima AM, Son R, Andrade HM. Identification of actinomycete communities in Antarctic soil from Barrientos Island using PCR-denaturing gradient gel electrophoresis. Genet Mol Res. 2012 Feb 8;11(1):277-91. doi: 10.4238/2012.February.8.3. PMID: 22370930.
  58. Nichols D, Cahoon N, Trakhtenberg EM, Pham L, Mehta A, Belanger A, Kanigan T, Lewis K, Epstein SS. Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species. Appl Environ Microbiol. 2010 Apr;76(8):2445-50. doi: 10.1128/AEM.01754-09. Epub 2010 Feb 19. PMID: 20173072; PMCID: PMC2849220.
  59. Bojana Bajić, Jelena Dodic, Jovana Grahovac. Optimization of medium for antimycotic production by Streptomyces Species. Jour. Nat. Sci, Matica Srpska Novi Sad. 2013;124:427-436. doi:10.2298/ZMSPN1324427B
  60. Latifa A, Husnan AI, Alkahtani MDF. Molecular identification of Streptomyces producing antibiotics and their antimicrobial activities. Annals of Agricultural Science. 2016;61(2):251-255. doi:10.1016/j.aoas.2016.06.002
  61. Tanaka Y, Hosaka T, Ochi K. Rare earth elements activate the secondary metabolite-biosynthetic gene clusters in Streptomyces coelicolor A3(2). J Antibiot (Tokyo). 2010 Aug;63(8):477-81. doi: 10.1038/ja.2010.53. Epub 2010 Jun 16. PMID: 20551989.
  62. Nichols D, Cahoon N, Trakhtenberg EM, Pham L, Mehta A, Belanger A, Kanigan T, Lewis K, Epstein SS. Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species. Appl Environ Microbiol. 2010 Apr;76(8):2445-50. doi: 10.1128/AEM.01754-09. Epub 2010 Feb 19. PMID: 20173072; PMCID: PMC2849220.
  63. Heinsch SC, Hsu SY, Otto-Hanson L, Kinkel L, Smanski MJ. Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils. BMC Genomics. 2019 Dec 19;20(1):994. doi:10.1186/s12864-019-6279-8. PMID: 31856709; PMCID: PMC6923854.
  64. Cheng Z, McCann S, Faraone N, Clarke JA, Hudson EA, Cloonan K, Hillier NK, Tahlan K. Production of Plant-Associated Volatiles by Select Model and Industrially Important Streptomyces spp. Microorganisms. 2020 Nov 11;8(11):1767. doi: 10.3390/microorganisms8111767. PMID: 33187102; PMCID: PMC7697265.
  65. Suutari M, Rönkä E, Lignell U, Rintala H, Nevalainen A. Characterisation of Streptomyces spp. isolated from water-damaged buildings. FEMS Microbiol Ecol. 2002 Jan 1;39(1):77-84. doi:10.1111/j.1574-6941.2002.tb00908.x. PMID: 19709186.
  66. Hamid ME, Mahgoub A, Babiker AJO, Babiker HAE, Holie MAI, Elhassan MM, Joseph MRP. Isolation and Identification of Streptomyces spp. from Desert and Savanna Soils in Sudan. Int J Environ Res Public Health. 2020 Nov 25:17(23)-8749. doi:10.3390/ijerph17238749. PMID: 33255614; PMCID: PMC7734577.
  67. Qiu Y, Wang S, Chen Z, Guo Y, Song Y. An Active Type I-E CRISPR-Cas System Identified in Streptomyces avermitilis PLoS One. 2016 Feb 22:11(2):e0149533. doi:10.1371/journal.pone.0149533. PMID:26901661; PMCID: PMC4762764.
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